bda

biosystems data analysis

Tag: Code

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  • DQ2

    Calculates the discriminant Q2 score. Source code accompanying the paper Discriminant Q2 for improved discrimination in PLSDA models

  • RV modified

    Modified RV-coefficient for matrix correlations for high dimensional data Reference: Matrix correlations for high-dimensional data: the modified RV-coefficientA.K. Smilde, H.A.L. Kiers, S. Bijlsma, C.M. Rubingh and M.J. van ErkBioinformatics Advance Access published December 10 2008 (Oxford University Press)

  • MLPLSDA

    MLPLSDA: Multilevel Data Analysis Also download the related tutorial

  • Crossfit

    A Model generating Global, Local and Crossfit models of crossed data with two factors, time and treatment.

  • Endocrine pulse identification

    Accompanying the paper Endocrine pulse identification using penalized methods and a minimum set of assumptions

  • Grey component analysis

  • Time lagged correlation matrix

    The code accompanying the paper Reverse engineering of metabolic networks, a critical assessment by Diana M. Hendrickx, Margriet M. W. B. Hendriks, Paul H. C. Eilers, Age K. Smilde and Huub C. J. Hoefsloot. Mol. BioSyst, Advance Article (2011)

  • Jacobian

    Fourth order approximation of the time derivatives of metabolite concentrations and calculation of the Jacobian.

  • Vertex-edge incidence matrix by using the zero slopes method.

  • Covariances Simultaneous Component Analysis

    Covariances Simultaneous Component Analysis (COVSCA). The toolbox accompanying the paper https://doi.org/10.1002/cem.2707